J3_5NO4_011
3D structure
- PDB id
- 5NO4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.16 Å
Loop
- Sequence
- UAU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases (A, C, G, U)
- 1183U
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NO4_011 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.1539
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NO4|1|A|U|1116
5NO4|1|A|A|1117
5NO4|1|A|U|1118
*
5NO4|1|A|A|1155
5NO4|1|A|G|1156
5NO4|1|A|A|1157
5NO4|1|A|C|1158
*
5NO4|1|A|G|1181
5NO4|1|A|G|1182
5NO4|1|A|U|1183
5NO4|1|A|G|1184
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
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