J3_5NP6_015

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5NP6|1|Y|U|686, 5NP6|1|Y|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NP6_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1371

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5NP6|1|Y|U|683
5NP6|1|Y|G|684
5NP6|1|Y|A|685
5NP6|1|Y|U|686
5NP6|1|Y|C|687
5NP6|1|Y|U|688
5NP6|1|Y|A|689
*
5NP6|1|Y|U|773
5NP6|1|Y|G|774
5NP6|1|Y|G|775
*
5NP6|1|Y|C|791
5NP6|1|Y|A|792
5NP6|1|Y|A|793
5NP6|1|Y|A|794

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain C

DNA topoisomerase small subunit

Chain a

50S ribosomal protein L2