J3_5NP6_033

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5NP6|1|Y|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NP6_033 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.111

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5NP6|1|Y|G|297
5NP6|1|Y|G|298
5NP6|1|Y|A|299
5NP6|1|Y|A|300
5NP6|1|Y|G|301
*
5NP6|1|Y|C|316
5NP6|1|Y|G|317
5NP6|1|Y|C|318
5NP6|1|Y|G|319
5NP6|1|Y|A|320
5NP6|1|Y|U|321
5NP6|1|Y|A|322
5NP6|1|Y|C|323
5NP6|1|Y|A|324
5NP6|1|Y|G|325
*
5NP6|1|Y|C|337
5NP6|1|Y|G|338
5NP6|1|Y|U|339
5NP6|1|Y|A|340
5NP6|1|Y|C|341

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain s

50S ribosomal protein L24