J3_5NRG_002

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

AC*GAUAUGC*GAUUU

Length

14 nucleotides

Bulged bases

5NRG|1|X|U|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NRG_002 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.1343

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5NRG|1|X|A|56
5NRG|1|X|C|57
*
5NRG|1|X|G|70
5NRG|1|X|A|71
5NRG|1|X|U|72
5NRG|1|X|A|73
5NRG|1|X|U|74
5NRG|1|X|G|75
5NRG|1|X|C|76
*
5NRG|1|X|G|109
5NRG|1|X|A|110
5NRG|1|X|U|111
5NRG|1|X|U|112
5NRG|1|X|U|113

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23

Chain V

50S ribosomal protein L29