J3_5NRG_003

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAAAC*GGGUUGAG*CUG

Length

16 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NRG_003 not in the Motif Atlas

Homologous match to J3_4WF9_014

Geometric discrepancy: 0.159

The information below is about J3_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NRG|1|X|C|272
5NRG|1|X|A|273
5NRG|1|X|A|274
5NRG|1|X|A|275
5NRG|1|X|C|276
*
5NRG|1|X|G|295
5NRG|1|X|G|296
5NRG|1|X|G|297
5NRG|1|X|U|298
5NRG|1|X|U|299
5NRG|1|X|G|300
5NRG|1|X|A|302
5NRG|1|X|G|303
*
5NRG|1|X|C|414
5NRG|1|X|U|415
5NRG|1|X|G|416

Current chains

Chain X

23S ribosomal RNA

Nearby chains