J3_5NRG_009

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUGCC*GGCGGCCCUAAGGUAG*CGAAAG

Length

27 nucleotides

Bulged bases

5NRG|1|X|A|1998

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NRG|1|X|C|1860
5NRG|1|X|U|1861
5NRG|1|X|G|1862
5NRG|1|X|C|1863
5NRG|1|X|C|1864
*
5NRG|1|X|G|1930
5NRG|1|X|G|1931
5NRG|1|X|C|1932
5NRG|1|X|G|1933
5NRG|1|X|G|1934
5NRG|1|X|C|1935
5NRG|1|X|C|1936
5NRG|1|X|C|1952
5NRG|1|X|U|1953
5NRG|1|X|A|1954
5NRG|1|X|A|1955
5NRG|1|X|G|1956
5NRG|1|X|G|1957
5NRG|1|X|U|1958
5NRG|1|X|A|1959
5NRG|1|X|G|1960
*
5NRG|1|X|C|1994
5NRG|1|X|G|1995
5NRG|1|X|A|1996
5NRG|1|X|A|1997
5NRG|1|X|A|1998
5NRG|1|X|G|1999

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2