J3_5NRG_010

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NRG_010 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.1631

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5NRG|1|X|U|2118
5NRG|1|X|U|2119
5NRG|1|X|G|2120
*
5NRG|1|X|C|2223
5NRG|1|X|U|2224
5NRG|1|X|A|2225
5NRG|1|X|A|2226
5NRG|1|X|C|2227
5NRG|1|X|C|2228
*
5NRG|1|X|G|2249
5NRG|1|X|A|2250
5NRG|1|X|G|2251
5NRG|1|X|A|2252
5NRG|1|X|C|2253
5NRG|1|X|A|2254
5NRG|1|X|G|2255

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2