J3_5NRG_014

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CC*GUUAAU*AAUCG

Length

13 nucleotides

Bulged bases

5NRG|1|X|U|2853, 5NRG|1|X|A|2855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NRG_014 not in the Motif Atlas

Homologous match to J3_7RQB_014

Geometric discrepancy: 0.1593

The information below is about J3_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_95952.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5NRG|1|X|C|2834
5NRG|1|X|C|2835
*
5NRG|1|X|G|2851
5NRG|1|X|U|2852
5NRG|1|X|U|2853
5NRG|1|X|A|2854
5NRG|1|X|A|2855
5NRG|1|X|U|2856
*
5NRG|1|X|A|2902
5NRG|1|X|A|2903
5NRG|1|X|U|2904
5NRG|1|X|C|2905
5NRG|1|X|G|2906

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain Z

50S ribosomal protein L32