J3_5NWY_005

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NWY_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0686

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5NWY|1|0|C|936
5NWY|1|0|A|937
5NWY|1|0|A|938
5NWY|1|0|G|939
*
5NWY|1|0|C|1344
5NWY|1|0|U|1345
5NWY|1|0|A|1346
5NWY|1|0|G|1347
5NWY|1|0|U|1348
5NWY|1|0|A|1349
5NWY|1|0|A|1350
*
5NWY|1|0|U|1372
5NWY|1|0|G|1373
5NWY|1|0|A|1374
5NWY|1|0|A|1375
5NWY|1|0|U|1376
5NWY|1|0|A|1377
5NWY|1|0|C|1378
5NWY|1|0|G|1379

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 6

30S ribosomal protein S7

Chain 8

30S ribosomal protein S9