J3_5NWY_014

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NWY_014 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.0771

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

5NWY|1|N|G|30
5NWY|1|N|C|31
*
5NWY|1|N|G|474
5NWY|1|N|C|475
5NWY|1|N|G|476
5NWY|1|N|A|477
5NWY|1|N|A|478
5NWY|1|N|A|479
5NWY|1|N|A|480
5NWY|1|N|G|481
*
5NWY|1|N|C|509
5NWY|1|N|C|510

Current chains

Chain N

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L20

Chain h

50S ribosomal protein L24