J3_5O2R_029
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5O2R|1|A|U|34, 5O2R|1|A|U|448, 5O2R|1|A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5O2R_029 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1078
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5O2R|1|A|C|32
5O2R|1|A|C|33
5O2R|1|A|U|34
5O2R|1|A|G|35
*
5O2R|1|A|C|445
5O2R|1|A|G|446
5O2R|1|A|A|447
5O2R|1|A|U|448
5O2R|1|A|A|449
5O2R|1|A|G|450
5O2R|1|A|U|451
5O2R|1|A|G|452
5O2R|1|A|A|453
5O2R|1|A|A|454
5O2R|1|A|C|455
5O2R|1|A|C|456
5O2R|1|A|A|457
5O2R|1|A|G|458
5O2R|1|A|U|459
5O2R|1|A|A|460
5O2R|1|A|C|461
*
5O2R|1|A|G|468
5O2R|1|A|G|469
5O2R|1|A|A|470
5O2R|1|A|A|471
5O2R|1|A|A|472
5O2R|1|A|G|473
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
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