J3_5O5J_008

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

5O5J|1|A|U|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O5J_008 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.185

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5O5J|1|A|U|972
5O5J|1|A|U|973
5O5J|1|A|U|974
5O5J|1|A|G|975
*
5O5J|1|A|C|1025
5O5J|1|A|A|1026
5O5J|1|A|G|1027
*
5O5J|1|A|C|1191
5O5J|1|A|U|1192
5O5J|1|A|U|1193
5O5J|1|A|A|1194
5O5J|1|A|U|1195
5O5J|1|A|G|1196

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z