J3_5O5J_010
3D structure
- PDB id
- 5O5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5O5J_010 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1213
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5O5J|1|A|C|1043
5O5J|1|A|G|1044
5O5J|1|A|U|1045
5O5J|1|A|C|1046
5O5J|1|A|A|1047
5O5J|1|A|G|1048
*
5O5J|1|A|C|1087
5O5J|1|A|G|1088
5O5J|1|A|C|1089
5O5J|1|A|A|1090
5O5J|1|A|A|1091
5O5J|1|A|C|1092
5O5J|1|A|C|1093
*
5O5J|1|A|G|1168
5O5J|1|A|A|1169
5O5J|1|A|U|1170
5O5J|1|A|G|1171
5O5J|1|A|A|1172
5O5J|1|A|C|1173
5O5J|1|A|G|1174
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain E
- 30S ribosomal protein S5
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14 type Z
- Chain V
- 30S ribosomal protein S2
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