J3_5O5J_011

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O5J_011 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1029

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5O5J|1|A|U|1053
5O5J|1|A|G|1054
*
5O5J|1|A|U|1063
5O5J|1|A|G|1064
5O5J|1|A|U|1065
5O5J|1|A|U|1066
5O5J|1|A|G|1067
*
5O5J|1|A|C|1078
5O5J|1|A|G|1079
5O5J|1|A|C|1080
5O5J|1|A|A|1081
5O5J|1|A|A|1082

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S5

Chain V

30S ribosomal protein S2