J3_5O60_005

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O60_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0689

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5O60|1|A|C|813
5O60|1|A|A|814
5O60|1|A|G|815
*
5O60|1|A|C|847
5O60|1|A|G|848
5O60|1|A|A|849
5O60|1|A|A|850
5O60|1|A|C|851
*
5O60|1|A|G|875
5O60|1|A|A|876
5O60|1|A|U|877
5O60|1|A|G|878

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2