J3_5O60_015

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CCC*GAUUGAU*AACCG

Length

15 nucleotides

Bulged bases

5O60|1|A|U|3054, 5O60|1|A|A|3056, 5O60|1|A|C|3105, 5O60|1|A|C|3106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O60|1|A|C|3035
5O60|1|A|C|3036
5O60|1|A|C|3037
*
5O60|1|A|G|3051
5O60|1|A|A|3052
5O60|1|A|U|3053
5O60|1|A|U|3054
5O60|1|A|G|3055
5O60|1|A|A|3056
5O60|1|A|U|3057
*
5O60|1|A|A|3103
5O60|1|A|A|3104
5O60|1|A|C|3105
5O60|1|A|C|3106
5O60|1|A|G|3107

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17

Chain b

50S ribosomal protein L32