J3_5O60_016

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UCCAUAG*CGC*GACA

Length

14 nucleotides

Bulged bases

5O60|1|B|C|12, 5O60|1|B|U|15, 5O60|1|B|C|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O60|1|B|U|11
5O60|1|B|C|12
5O60|1|B|C|13
5O60|1|B|A|14
5O60|1|B|U|15
5O60|1|B|A|16
5O60|1|B|G|17
*
5O60|1|B|C|69
5O60|1|B|G|70
5O60|1|B|C|71
*
5O60|1|B|G|104
5O60|1|B|A|105
5O60|1|B|C|106
5O60|1|B|A|107

Current chains

Chain B

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain W

50S ribosomal protein L25

Chain X

50S ribosomal protein L27