J3_5O61_001

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O61_001 not in the Motif Atlas

Geometric match to J3_4WF9_010

Geometric discrepancy: 0.0884

The information below is about J3_4WF9_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

5O61|1|A|G|27
5O61|1|A|C|28
*
5O61|1|A|G|562
5O61|1|A|U|563
5O61|1|A|G|564
5O61|1|A|A|565
5O61|1|A|A|566
5O61|1|A|A|567
5O61|1|A|A|568
5O61|1|A|G|569
*
5O61|1|A|C|596
5O61|1|A|C|597

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20

Chain T

50S ribosomal protein L22

Chain V

50S ribosomal protein L24