J3_5O61_008

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

5O61|1|A|U|801, 5O61|1|A|A|907, 5O61|1|A|A|908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O61_008 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0926

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5O61|1|A|U|798
5O61|1|A|G|799
5O61|1|A|A|800
5O61|1|A|U|801
5O61|1|A|C|802
5O61|1|A|U|803
5O61|1|A|A|804
*
5O61|1|A|U|888
5O61|1|A|A|889
5O61|1|A|G|890
*
5O61|1|A|C|906
5O61|1|A|A|907
5O61|1|A|A|908
5O61|1|A|A|909

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain E

50S ribosomal protein L4

Chain d

50S ribosomal protein L34