3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
AUUAAUUC*GAAGAACCUUAC*GGCUU
Length
25 nucleotides
Bulged bases
5O61|1|BA|A|957, 5O61|1|BA|G|958, 5O61|1|BA|A|960
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5O61_030 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0922
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5O61|1|BA|A|937
5O61|1|BA|U|938
5O61|1|BA|U|939
5O61|1|BA|A|940
5O61|1|BA|A|941
5O61|1|BA|U|942
5O61|1|BA|U|943
5O61|1|BA|C|944
*
5O61|1|BA|G|955
5O61|1|BA|A|956
5O61|1|BA|A|957
5O61|1|BA|G|958
5O61|1|BA|A|959
5O61|1|BA|A|960
5O61|1|BA|C|961
5O61|1|BA|C|962
5O61|1|BA|U|963
5O61|1|BA|U|964
5O61|1|BA|A|965
5O61|1|BA|C|966
*
5O61|1|BA|G|1202
5O61|1|BA|G|1203
5O61|1|BA|C|1204
5O61|1|BA|U|1205
5O61|1|BA|U|1206

Current chains

Chain BA
16S rRNA

Nearby chains

Chain BJ
30S ribosomal protein S10
Chain BM
30S ribosomal protein S13
Chain BN
30S ribosomal protein S14 type Z
Chain BS
30S ribosomal protein S19

Coloring options:


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