J3_5OA3_001

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OA3_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1007

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5OA3|1|2|A|40
5OA3|1|2|G|41
*
5OA3|1|2|C|481
5OA3|1|2|G|482
5OA3|1|2|C|483
5OA3|1|2|A|484
5OA3|1|2|A|485
5OA3|1|2|A|486
5OA3|1|2|U|487
*
5OA3|1|2|A|512
5OA3|1|2|G|513
5OA3|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23