J3_5ON6_090

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ON6_090 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.1039

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

5ON6|1|AR|G|1230
5ON6|1|AR|A|1231
5ON6|1|AR|C|1232
*
5ON6|1|AR|G|1256
5ON6|1|AR|C|1257
5ON6|1|AR|U|1258
5ON6|1|AR|A|1259
5ON6|1|AR|A|1260
5ON6|1|AR|G|1261
5ON6|1|AR|G|1262
*
5ON6|1|AR|C|1277
5ON6|1|AR|A|1278
5ON6|1|AR|C|1279

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain m2

60S ribosomal protein L12

Chain p0

60S acidic ribosomal protein P0