J3_5ON6_091

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ON6_091 not in the Motif Atlas

Homologous match to J3_8P9A_087

Geometric discrepancy: 0.0935

The information below is about J3_8P9A_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.1

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

5ON6|1|AR|C|1631
5ON6|1|AR|A|1632
*
5ON6|1|AR|U|1641
5ON6|1|AR|A|1642
5ON6|1|AR|A|1643
5ON6|1|AR|C|1644
5ON6|1|AR|U|1645
*
5ON6|1|AR|A|1810
5ON6|1|AR|G|1811

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein L27-A

Chain DI

60S ribosomal protein L34-A

Chain DM

60S ribosomal protein L38