J3_5OPT_001

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GG*CGCAAAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OPT_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1465

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5OPT|1|E|G|41
5OPT|1|E|G|42
*
5OPT|1|E|C|480
5OPT|1|E|G|481
5OPT|1|E|C|482
5OPT|1|E|A|483
5OPT|1|E|A|484
5OPT|1|E|A|485
5OPT|1|E|U|486
*
5OPT|1|E|A|516
5OPT|1|E|G|517
5OPT|1|E|C|518

Current chains

Chain E

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S23, putative

Chain b

40S ribosomal protein S9, putative