J3_5OPT_005

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AC*GAACUACAG*CAU

Length

14 nucleotides

Bulged bases

5OPT|1|E|C|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OPT_005 not in the Motif Atlas

Geometric match to J3_1G1X_004

Geometric discrepancy: 0.2509

The information below is about J3_1G1X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11934.4

Basepair signature

cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5OPT|1|E|A|1218
5OPT|1|E|C|1219
*
5OPT|1|E|G|1263
5OPT|1|E|A|1264
5OPT|1|E|A|1265
5OPT|1|E|C|1266
5OPT|1|E|U|1267
5OPT|1|E|A|1268
5OPT|1|E|C|1269
5OPT|1|E|A|1270
5OPT|1|E|G|1271
*
5OPT|1|E|C|1278
5OPT|1|E|A|1279
5OPT|1|E|U|1280

Current chains

Chain E

18S rRNA

Nearby chains

Chain T

40S ribosomal protein S26

Chain V

40S ribosomal protein S14, putative

Chain W

40S ribosomal protein S3a-2