J3_5OPT_010
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUUUGG*CGAGAUC*GGCAACA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OPT_010 not in the Motif Atlas
- Geometric match to J3_4LFB_007
- Geometric discrepancy: 0.3924
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5OPT|1|E|U|1751
5OPT|1|E|U|1752
5OPT|1|E|U|1753
5OPT|1|E|U|1754
5OPT|1|E|G|1755
5OPT|1|E|G|1756
*
5OPT|1|E|C|1795
5OPT|1|E|G|1796
5OPT|1|E|A|1797
5OPT|1|E|G|1798
5OPT|1|E|A|1799
5OPT|1|E|U|1800
5OPT|1|E|C|1801
*
5OPT|1|E|G|1933
5OPT|1|E|G|1934
5OPT|1|E|C|1935
5OPT|1|E|A|1936
5OPT|1|E|A|1937
5OPT|1|E|C|1938
5OPT|1|E|A|1939
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain d
- 40S ribosomal protein S2, putative
- Chain k
- 40S ribosomal protein S17, putative
- Chain l
- Ribosomal protein S20, putative
- Chain m
- 40S ribosomal protein S3, putative
- Chain q
- Ribosomal protein S29, putative
- Chain r
- 40S ribosomal protein S16, putative
Coloring options: