J3_5OQL_005
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OQL_005 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.2794
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5OQL|1|1|U|1752
5OQL|1|1|G|1753
5OQL|1|1|G|1754
5OQL|1|1|A|1755
*
5OQL|1|1|U|2051
5OQL|1|1|A|2052
5OQL|1|1|C|2053
*
5OQL|1|1|G|2157
5OQL|1|1|G|2158
5OQL|1|1|A|2159
5OQL|1|1|A|2160
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain b
- Putative U3 small nucleolar ribonucleoprotein
- Chain e
- Emg1
Coloring options: