J3_5OT7_010
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 5OT7|1|4|U|272|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OT7_010 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.2226
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5OT7|1|4|U|269
5OT7|1|4|A|270
5OT7|1|4|A|271
5OT7|1|4|A|271|||A
5OT7|1|4|C|271|||B
*
5OT7|1|4|G|271|||V
5OT7|1|4|G|271|||W
5OT7|1|4|G|271|||X
5OT7|1|4|U|271|||Y
5OT7|1|4|C|271|||Z
5OT7|1|4|G|272
5OT7|1|4|U|272|||A
5OT7|1|4|G|272|||B
*
5OT7|1|4|C|366
5OT7|1|4|G|370
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L9
- Chain W
- 50S ribosomal protein L28
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