J3_5OT7_030
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 5OT7|1|4|G|686, 5OT7|1|4|G|792, 5OT7|1|4|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OT7_030 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.13
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
5OT7|1|4|C|683
5OT7|1|4|G|684
5OT7|1|4|A|685
5OT7|1|4|G|686
5OT7|1|4|C|687
5OT7|1|4|U|688
5OT7|1|4|A|689
*
5OT7|1|4|U|773
5OT7|1|4|A|774
5OT7|1|4|G|775
*
5OT7|1|4|C|791
5OT7|1|4|G|792
5OT7|1|4|A|793
5OT7|1|4|G|794
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L34
- Chain g
- 50S ribosomal protein L2
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