J3_5T2A_004

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGC*GAGAUUAUGG*CUAG

Length

18 nucleotides

Bulged bases

5T2A|1|2|G|919, 5T2A|1|2|U|971, 5T2A|1|2|U|973

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|C|917
5T2A|1|2|A|918
5T2A|1|2|G|919
5T2A|1|2|C|920
*
5T2A|1|2|G|966
5T2A|1|2|A|967
5T2A|1|2|G|968
5T2A|1|2|A|969
5T2A|1|2|U|970
5T2A|1|2|U|971
5T2A|1|2|A|972
5T2A|1|2|U|973
5T2A|1|2|G|974
5T2A|1|2|G|975
*
5T2A|1|2|C|1099
5T2A|1|2|U|1100
5T2A|1|2|A|1101
5T2A|1|2|G|1102

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 4

eS7

Chain AG

uS15

Chain R

eL19