J3_5T2A_006

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAUGAAUU*AGCACACG*CUUUGAG

Length

24 nucleotides

Bulged bases

5T2A|1|2|A|1447

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|C|1284
5T2A|1|2|C|1285
5T2A|1|2|A|1286
5T2A|1|2|U|1287
5T2A|1|2|G|1288
5T2A|1|2|A|1289
5T2A|1|2|A|1290
5T2A|1|2|U|1291
5T2A|1|2|U|1292
*
5T2A|1|2|A|1413
5T2A|1|2|G|1414
5T2A|1|2|C|1415
5T2A|1|2|A|1416
5T2A|1|2|C|1417
5T2A|1|2|A|1433
5T2A|1|2|C|1434
5T2A|1|2|G|1435
*
5T2A|1|2|C|1442
5T2A|1|2|U|1443
5T2A|1|2|U|1444
5T2A|1|2|U|1445
5T2A|1|2|G|1446
5T2A|1|2|A|1447
5T2A|1|2|G|1448

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 0

eS1

Chain AC

uS2

Chain AG

uS15

Chain AJ

uS8

Chain AR

eS21

Chain AV

eS26

Chain AW

eS27