J3_5T2A_007

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAGAC*GUCUCGUAG*CGAUUACG

Length

23 nucleotides

Bulged bases

5T2A|1|2|C|2031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|C|1515
5T2A|1|2|A|1516
5T2A|1|2|A|1517
5T2A|1|2|G|1518
5T2A|1|2|A|1519
5T2A|1|2|C|1520
*
5T2A|1|2|G|1995
5T2A|1|2|U|1996
5T2A|1|2|C|1997
5T2A|1|2|U|1998
5T2A|1|2|C|1999
5T2A|1|2|G|2000
5T2A|1|2|U|2001
5T2A|1|2|A|2002
5T2A|1|2|G|2003
*
5T2A|1|2|C|2025
5T2A|1|2|G|2026
5T2A|1|2|A|2027
5T2A|1|2|U|2028
5T2A|1|2|U|2029
5T2A|1|2|A|2030
5T2A|1|2|C|2031
5T2A|1|2|G|2032

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AK

uS9

Chain AN

uS7

Chain AZ

eS28