J3_5T2A_010

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*UGUUUG*CGUCAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|G|1646
5T2A|1|2|U|1647
5T2A|1|2|G|1648
*
5T2A|1|2|U|1657
5T2A|1|2|G|1658
5T2A|1|2|U|1659
5T2A|1|2|U|1660
5T2A|1|2|U|1661
5T2A|1|2|G|1662
*
5T2A|1|2|C|1671
5T2A|1|2|G|1672
5T2A|1|2|U|1673
5T2A|1|2|C|1674
5T2A|1|2|A|1675
5T2A|1|2|A|1676
5T2A|1|2|C|1677

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AC

uS2

Chain AL

eS17

Chain AP

uS5