J3_5T2A_011

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGC*GGAUUCCU*AGGUGAAAUUU

Length

22 nucleotides

Bulged bases

5T2A|1|2|U|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|A|1690
5T2A|1|2|G|1691
5T2A|1|2|C|1692
*
5T2A|1|2|G|1787
5T2A|1|2|G|1788
5T2A|1|2|A|1789
5T2A|1|2|U|1790
5T2A|1|2|U|1791
5T2A|1|2|C|1792
5T2A|1|2|C|1793
5T2A|1|2|U|1794
*
5T2A|1|2|A|1808
5T2A|1|2|G|1809
5T2A|1|2|G|1810
5T2A|1|2|U|1811
5T2A|1|2|G|1812
5T2A|1|2|A|1813
5T2A|1|2|A|1814
5T2A|1|2|A|1815
5T2A|1|2|U|1816
5T2A|1|2|U|1817
5T2A|1|2|U|1818

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 7

RACK1

Chain 8

uS14

Chain AK

uS9

Chain AL

eS17

Chain AN

uS7

Chain AQ

uS10

Chain AZ

eS28