J3_5T2A_016

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCUG*CUUAU*AGACAUCUG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|B|C|614
5T2A|1|B|U|615
5T2A|1|B|C|616
5T2A|1|B|U|617
5T2A|1|B|G|618
*
5T2A|1|B|C|695
5T2A|1|B|U|696
5T2A|1|B|U|697
5T2A|1|B|A|698
5T2A|1|B|U|699
*
5T2A|1|B|A|953
5T2A|1|B|G|954
5T2A|1|B|A|955
5T2A|1|B|C|956
5T2A|1|B|A|957
5T2A|1|B|U|958
5T2A|1|B|C|959
5T2A|1|B|U|960
5T2A|1|B|G|961

Current chains

Chain B

LSU-beta

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain O

eL15

Chain c

uL2

Chain v

eL8