J3_5T2A_019

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAC*GAUAAGU*AAUCUU

Length

16 nucleotides

Bulged bases

5T2A|1|C|A|153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|C|A|134
5T2A|1|C|A|135
5T2A|1|C|C|136
*
5T2A|1|C|G|149
5T2A|1|C|A|150
5T2A|1|C|U|151
5T2A|1|C|A|152
5T2A|1|C|A|153
5T2A|1|C|G|154
5T2A|1|C|U|155
*
5T2A|1|C|A|186
5T2A|1|C|A|187
5T2A|1|C|U|188
5T2A|1|C|C|189
5T2A|1|C|U|190
5T2A|1|C|U|191

Current chains

Chain C

5.8S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain V

uL23

Chain i

uL29

Chain l

eL37

Chain o

eL39