J3_5T2A_021

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCU*AGAACAUG*CUCAG

Length

17 nucleotides

Bulged bases

5T2A|1|H|U|24, 5T2A|1|H|C|121, 5T2A|1|H|A|122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|H|C|5
5T2A|1|H|U|6
5T2A|1|H|C|7
5T2A|1|H|U|8
*
5T2A|1|H|A|18
5T2A|1|H|G|19
5T2A|1|H|A|20
5T2A|1|H|A|21
5T2A|1|H|C|22
5T2A|1|H|A|23
5T2A|1|H|U|24
5T2A|1|H|G|25
*
5T2A|1|H|C|119
5T2A|1|H|U|120
5T2A|1|H|C|121
5T2A|1|H|A|122
5T2A|1|H|G|123

Current chains

Chain H

srRNA4

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain G

Large subunit ribosomal RNA; LSU rRNA

Chain P

uL22

Chain d

uL3

Chain f

eL31