J3_5T2A_023

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGACAGUAAAACCAAUG*CAGUAACACCCAGCAGUG*CAA

Length

38 nucleotides

Bulged bases

5T2A|1|2|G|252, 5T2A|1|2|A|281, 5T2A|1|2|A|285, 5T2A|1|2|A|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|U|247
5T2A|1|2|G|248
5T2A|1|2|A|249
5T2A|1|2|C|250
5T2A|1|2|A|251
5T2A|1|2|G|252
5T2A|1|2|U|253
5T2A|1|2|A|254
5T2A|1|2|A|255
5T2A|1|2|A|256
5T2A|1|2|A|257
5T2A|1|2|C|258
5T2A|1|2|C|259
5T2A|1|2|A|260
5T2A|1|2|A|261
5T2A|1|2|U|262
5T2A|1|2|G|263
*
5T2A|1|2|C|274
5T2A|1|2|A|275
5T2A|1|2|G|276
5T2A|1|2|U|277
5T2A|1|2|A|278
5T2A|1|2|A|279
5T2A|1|2|C|280
5T2A|1|2|A|281
5T2A|1|2|C|282
5T2A|1|2|C|283
5T2A|1|2|C|284
5T2A|1|2|A|285
5T2A|1|2|G|286
5T2A|1|2|C|287
5T2A|1|2|A|288
5T2A|1|2|G|289
5T2A|1|2|U|290
5T2A|1|2|G|291
*
5T2A|1|2|C|298
5T2A|1|2|A|299
5T2A|1|2|A|300

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

eS4

Chain 3

eS6

Chain AE

uS17