J3_5T2A_024

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GAACUACAGC*GCAU

Length

16 nucleotides

Bulged bases

5T2A|1|2|C|1181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|A|1130
5T2A|1|2|C|1131
*
5T2A|1|2|G|1175
5T2A|1|2|A|1176
5T2A|1|2|A|1177
5T2A|1|2|C|1178
5T2A|1|2|U|1179
5T2A|1|2|A|1180
5T2A|1|2|C|1181
5T2A|1|2|A|1182
5T2A|1|2|G|1183
5T2A|1|2|C|1184
*
5T2A|1|2|G|1189
5T2A|1|2|C|1190
5T2A|1|2|A|1191
5T2A|1|2|U|1192

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 0

eS1

Chain AH

uS11

Chain AV

eS26

Chain c

uL2

Chain m

eL43