J3_5T2A_025

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCGGUUUAAUUU*GGGGAACUUUAC*GCGACACGCGCAC

Length

39 nucleotides

Bulged bases

5T2A|1|2|G|1553, 5T2A|1|2|G|1555, 5T2A|1|2|A|1556, 5T2A|1|2|A|1557, 5T2A|1|2|A|1861, 5T2A|1|2|A|1863, 5T2A|1|2|G|1865

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|G|1528
5T2A|1|2|U|1529
5T2A|1|2|G|1530
5T2A|1|2|C|1531
5T2A|1|2|G|1532
5T2A|1|2|G|1533
5T2A|1|2|U|1534
5T2A|1|2|U|1535
5T2A|1|2|U|1536
5T2A|1|2|A|1537
5T2A|1|2|A|1538
5T2A|1|2|U|1539
5T2A|1|2|U|1540
5T2A|1|2|U|1541
*
5T2A|1|2|G|1552
5T2A|1|2|G|1553
5T2A|1|2|G|1554
5T2A|1|2|G|1555
5T2A|1|2|A|1556
5T2A|1|2|A|1557
5T2A|1|2|C|1558
5T2A|1|2|U|1559
5T2A|1|2|U|1560
5T2A|1|2|U|1561
5T2A|1|2|A|1562
5T2A|1|2|C|1563
*
5T2A|1|2|G|1858
5T2A|1|2|C|1859
5T2A|1|2|G|1860
5T2A|1|2|A|1861
5T2A|1|2|C|1862
5T2A|1|2|A|1863
5T2A|1|2|C|1864
5T2A|1|2|G|1865
5T2A|1|2|C|1866
5T2A|1|2|G|1867
5T2A|1|2|C|1868
5T2A|1|2|A|1869
5T2A|1|2|C|1870

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 8

uS14

Chain AI

uS19

Chain AK

uS9

Chain AM

uS13

Chain AO

eS19

Chain AQ

uS10