J3_5T2A_028
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGCGCAAAGCA*UGCUGAAUAC*GUGAGUAU
- Length
- 29 nucleotides
- Bulged bases
- 5T2A|1|A|A|217, 5T2A|1|A|U|219, 5T2A|1|A|U|237
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|A|A|194
5T2A|1|A|G|195
5T2A|1|A|C|196
5T2A|1|A|G|197
5T2A|1|A|C|198
5T2A|1|A|A|199
5T2A|1|A|A|200
5T2A|1|A|A|201
5T2A|1|A|G|202
5T2A|1|A|C|203
5T2A|1|A|A|204
*
5T2A|1|A|U|212
5T2A|1|A|G|213
5T2A|1|A|C|214
5T2A|1|A|U|215
5T2A|1|A|G|216
5T2A|1|A|A|217
5T2A|1|A|A|218
5T2A|1|A|U|219
5T2A|1|A|A|220
5T2A|1|A|C|221
*
5T2A|1|A|G|232
5T2A|1|A|U|233
5T2A|1|A|G|234
5T2A|1|A|A|235
5T2A|1|A|G|236
5T2A|1|A|U|237
5T2A|1|A|A|238
5T2A|1|A|U|239
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- uL24
- Chain a
- eL28
- Chain g
- eL32
- Chain p
- uL4
Coloring options: