J3_5T2A_029
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAG*CGAAAGUU*ACUUG
- Length
- 30 nucleotides
- Bulged bases
- 5T2A|1|A|U|383, 5T2A|1|A|A|391, 5T2A|1|A|U|409, 5T2A|1|C|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|A|C|380
5T2A|1|A|G|381
5T2A|1|A|A|382
5T2A|1|A|U|383
5T2A|1|A|A|384
5T2A|1|A|G|385
5T2A|1|A|C|386
5T2A|1|A|G|387
5T2A|1|A|A|388
5T2A|1|A|A|389
5T2A|1|A|C|390
5T2A|1|A|A|391
5T2A|1|A|A|392
5T2A|1|A|G|393
5T2A|1|A|U|394
5T2A|1|A|A|395
5T2A|1|A|G|396
*
5T2A|1|A|C|403
5T2A|1|A|G|404
5T2A|1|A|A|405
5T2A|1|A|A|406
5T2A|1|A|A|407
5T2A|1|A|G|408
5T2A|1|A|U|409
5T2A|1|A|U|410
*
5T2A|1|C|A|110
5T2A|1|C|C|111
5T2A|1|C|U|112
5T2A|1|C|U|113
5T2A|1|C|G|114
Current chains
- Chain A
- LSU-alpha
- Chain C
- 5.8S rRNA
Nearby chains
- Chain X
- uL24
- Chain l
- eL37
- Chain o
- eL39
- Chain p
- uL4
Coloring options: