J3_5T2A_032
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAA*UGAAAUGAGCGGAG*CUCCGUGAUGCUCCAUGU
- Length
- 35 nucleotides
- Bulged bases
- 5T2A|1|A|A|575, 5T2A|1|A|G|576, 5T2A|1|A|U|630, 5T2A|1|A|G|631, 5T2A|1|A|U|633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|A|G|492
5T2A|1|A|A|493
5T2A|1|A|A|494
*
5T2A|1|A|U|568
5T2A|1|A|G|569
5T2A|1|A|A|570
5T2A|1|A|A|571
5T2A|1|A|A|572
5T2A|1|A|U|573
5T2A|1|A|G|574
5T2A|1|A|A|575
5T2A|1|A|G|576
5T2A|1|A|C|577
5T2A|1|A|G|578
5T2A|1|A|G|579
5T2A|1|A|A|580
5T2A|1|A|G|581
*
5T2A|1|A|C|625
5T2A|1|A|U|626
5T2A|1|A|C|627
5T2A|1|A|C|628
5T2A|1|A|G|629
5T2A|1|A|U|630
5T2A|1|A|G|631
5T2A|1|A|A|632
5T2A|1|A|U|633
5T2A|1|A|G|634
5T2A|1|A|C|635
5T2A|1|A|U|636
5T2A|1|A|C|637
5T2A|1|A|C|638
5T2A|1|A|A|639
5T2A|1|A|U|640
5T2A|1|A|G|641
5T2A|1|A|U|642
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain F
- srRNA3
- Chain a
- eL28
- Chain g
- eL32
- Chain j
- eL33
- Chain p
- uL4
- Chain t
- eL6
- Chain u
- uL30
Coloring options: