J3_5T2A_034

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAU*AACAAAC*GAAAGAAAAGAA

Length

22 nucleotides

Bulged bases

5T2A|1|A|A|1116, 5T2A|1|A|G|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|A|U|1036
5T2A|1|A|A|1037
5T2A|1|A|U|1038
*
5T2A|1|A|A|1113
5T2A|1|A|A|1114
5T2A|1|A|C|1115
5T2A|1|A|A|1116
5T2A|1|A|A|1117
5T2A|1|A|A|1118
5T2A|1|A|C|1119
*
5T2A|1|A|G|1145
5T2A|1|A|A|1146
5T2A|1|A|A|1147
5T2A|1|A|A|1148
5T2A|1|A|G|1149
5T2A|1|A|A|1150
5T2A|1|A|A|1151
5T2A|1|A|A|1152
5T2A|1|A|A|1153
5T2A|1|A|G|1154
5T2A|1|A|A|1155
5T2A|1|A|A|1156

Current chains

Chain A

LSU-alpha

Nearby chains

Chain Q

eL20

Chain S

eL21

Chain b

eL29

Chain u

uL30