J3_5T2A_036
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAA*UUUUGUUAGGAAAGU*AAAGG
- Length
- 23 nucleotides
- Bulged bases
- 5T2A|1|A|U|1663, 5T2A|1|A|G|1668, 5T2A|1|A|A|1670, 5T2A|1|A|G|1673
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|A|C|1647
5T2A|1|A|A|1648
5T2A|1|A|A|1649
*
5T2A|1|A|U|1660
5T2A|1|A|U|1661
5T2A|1|A|U|1662
5T2A|1|A|U|1663
5T2A|1|A|G|1664
5T2A|1|A|U|1665
5T2A|1|A|U|1666
5T2A|1|A|A|1667
5T2A|1|A|G|1668
5T2A|1|A|G|1669
5T2A|1|A|A|1670
5T2A|1|A|A|1671
5T2A|1|A|A|1672
5T2A|1|A|G|1673
5T2A|1|A|U|1674
*
5T2A|1|A|A|1730
5T2A|1|A|A|1731
5T2A|1|A|A|1732
5T2A|1|A|G|1733
5T2A|1|A|G|1734
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain E
- srRNA1
- Chain O
- eL15
- Chain V
- uL23
- Chain c
- uL2
- Chain l
- eL37
- Chain v
- eL8
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