J3_5T2A_040
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CACCUACAAGACUG*CC*GAAG
- Length
- 20 nucleotides
- Bulged bases
- 5T2A|1|F|A|14, 5T2A|1|F|C|15, 5T2A|1|F|A|23, 5T2A|1|F|C|24, 5T2A|1|F|A|42, 5T2A|1|F|A|43
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|F|C|13
5T2A|1|F|A|14
5T2A|1|F|C|15
5T2A|1|F|C|16
5T2A|1|F|U|17
5T2A|1|F|A|18
5T2A|1|F|C|19
5T2A|1|F|A|20
5T2A|1|F|A|21
5T2A|1|F|G|22
5T2A|1|F|A|23
5T2A|1|F|C|24
5T2A|1|F|U|25
5T2A|1|F|G|26
*
5T2A|1|F|C|37
5T2A|1|F|C|38
*
5T2A|1|F|G|41
5T2A|1|F|A|42
5T2A|1|F|A|43
5T2A|1|F|G|44
Current chains
- Chain F
- srRNA3
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- uL13
- Chain N
- eL14
- Chain Q
- eL20
- Chain j
- eL33
- Chain w
- uL6
Coloring options: