J3_5T2A_042

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUCCGGACAGGAUGAGGAUUGACA*UUUCUCGAUUCCCUGAAUG*CUCAAUGUU

Length

52 nucleotides

Bulged bases

5T2A|1|2|G|1571, 5T2A|1|2|G|1577, 5T2A|1|2|U|1579, 5T2A|1|2|G|1580, 5T2A|1|2|A|1581, 5T2A|1|2|G|1582, 5T2A|1|2|G|1609, 5T2A|1|2|U|1611, 5T2A|1|2|A|1848, 5T2A|1|2|U|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|A|1567
5T2A|1|2|U|1568
5T2A|1|2|C|1569
5T2A|1|2|C|1570
5T2A|1|2|G|1571
5T2A|1|2|G|1572
5T2A|1|2|A|1573
5T2A|1|2|C|1574
5T2A|1|2|A|1575
5T2A|1|2|G|1576
5T2A|1|2|G|1577
5T2A|1|2|A|1578
5T2A|1|2|U|1579
5T2A|1|2|G|1580
5T2A|1|2|A|1581
5T2A|1|2|G|1582
5T2A|1|2|G|1583
5T2A|1|2|A|1584
5T2A|1|2|U|1585
5T2A|1|2|U|1586
5T2A|1|2|G|1587
5T2A|1|2|A|1588
5T2A|1|2|C|1589
5T2A|1|2|A|1590
*
5T2A|1|2|U|1603
5T2A|1|2|U|1604
5T2A|1|2|U|1605
5T2A|1|2|C|1606
5T2A|1|2|U|1607
5T2A|1|2|C|1608
5T2A|1|2|G|1609
5T2A|1|2|A|1610
5T2A|1|2|U|1611
5T2A|1|2|U|1612
5T2A|1|2|C|1613
5T2A|1|2|C|1614
5T2A|1|2|C|1615
5T2A|1|2|U|1616
5T2A|1|2|G|1617
5T2A|1|2|A|1618
5T2A|1|2|A|1619
5T2A|1|2|U|1620
5T2A|1|2|G|1621
*
5T2A|1|2|C|1845
5T2A|1|2|U|1846
5T2A|1|2|C|1847
5T2A|1|2|A|1848
5T2A|1|2|A|1849
5T2A|1|2|U|1850
5T2A|1|2|G|1851
5T2A|1|2|U|1852
5T2A|1|2|U|1853

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 8

uS14

Chain AD

eS10

Chain AI

uS19