J3_5T2A_046
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AC*GAUAAGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 5T2A|1|C|U|151, 5T2A|1|C|A|153
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2A_046 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.1648
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
5T2A|1|C|A|135
5T2A|1|C|C|136
*
5T2A|1|C|G|149
5T2A|1|C|A|150
5T2A|1|C|U|151
5T2A|1|C|A|152
5T2A|1|C|A|153
5T2A|1|C|G|154
5T2A|1|C|U|155
*
5T2A|1|C|A|186
5T2A|1|C|A|187
5T2A|1|C|U|188
5T2A|1|C|C|189
5T2A|1|C|U|190
Current chains
- Chain C
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain V
- uL23
- Chain i
- uL29
- Chain l
- eL37
- Chain o
- eL39
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