J3_5T2C_026
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 5T2C|1|A|C|2470, 5T2C|1|A|A|2472, 5T2C|1|A|G|2475, 5T2C|1|A|G|2503, 5T2C|1|A|C|2504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2C|1|A|A|2451
5T2C|1|A|G|2452
5T2C|1|A|A|2453
5T2C|1|A|U|2454
5T2C|1|A|G|2455
5T2C|1|A|G|2456
*
5T2C|1|A|C|2465
5T2C|1|A|G|2466
5T2C|1|A|U|2467
5T2C|1|A|U|2468
5T2C|1|A|C|2469
5T2C|1|A|C|2470
5T2C|1|A|G|2471
5T2C|1|A|A|2472
5T2C|1|A|A|2473
5T2C|1|A|G|2474
5T2C|1|A|G|2475
5T2C|1|A|G|2476
*
5T2C|1|A|C|2501
5T2C|1|A|G|2502
5T2C|1|A|G|2503
5T2C|1|A|C|2504
5T2C|1|A|C|2505
5T2C|1|A|G|2506
5T2C|1|A|A|2507
5T2C|1|A|U|2508
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L8
- Chain R
- 60S ribosomal protein L23a
- Chain d
- 60S ribosomal protein L37
- Chain n
- 60S ribosomal protein L7a
- Chain t
- 60S ribosomal protein L15
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