J3_5T2C_029

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAAAGAUUAAGCC*GGCGCGCAAAU*AGUGACGA

Length

33 nucleotides

Bulged bases

5T2C|1|AA|A|42, 5T2C|1|AA|A|45, 5T2C|1|AA|A|46, 5T2C|1|AA|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|U|36
5T2C|1|AA|C|37
5T2C|1|AA|A|38
5T2C|1|AA|A|39
5T2C|1|AA|A|40
5T2C|1|AA|G|41
5T2C|1|AA|A|42
5T2C|1|AA|U|43
5T2C|1|AA|U|44
5T2C|1|AA|A|45
5T2C|1|AA|A|46
5T2C|1|AA|G|47
5T2C|1|AA|C|48
5T2C|1|AA|C|49
*
5T2C|1|AA|G|477
5T2C|1|AA|G|478
5T2C|1|AA|C|479
5T2C|1|AA|G|480
5T2C|1|AA|C|481
5T2C|1|AA|G|482
5T2C|1|AA|C|483
5T2C|1|AA|A|484
5T2C|1|AA|A|485
5T2C|1|AA|A|486
5T2C|1|AA|U|487
*
5T2C|1|AA|A|512
5T2C|1|AA|G|513
5T2C|1|AA|U|514
5T2C|1|AA|G|515
5T2C|1|AA|A|516
5T2C|1|AA|C|517
5T2C|1|AA|G|518
5T2C|1|AA|A|519

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S23

Chain AL

40S ribosomal protein S9

Chain AQ

40S ribosomal protein S24

Chain Ar

40S ribosomal protein S4, X isoform